config/crd/bases/mcp.agent-hellboy.io_mcpservers.yaml defines the MCPServer CRD with schema, printer columns, and validation; used by kubectl apply during setup.
config/default/kustomization.yaml kustomize entry assembling manager, RBAC, CRD, and webhook assets for operator deployment.
config/manager holds the controller-manager Deployment and PodDisruptionBudget manifests; manager.yaml sets image placeholder, args, probes, and RBAC subjects.
config/rbac contains service account, role, and role binding definitions used by the operator.
config/ingress provides base Traefik ingress controller manifests and overlays (http, prod, dev) to install ingress with different args/ports.
config/registry contains manifests to deploy the internal Docker registry (namespace, deployment, service, pvc, ingress) plus a TLS overlay with ingress/secret adjustments.
config/cert-manager offers sample cert-manager issuer/certificate for securing registry ingress.